Phylogenetic footprinting online dating Chat with adults europe
They are responsible for over 45% of our planet's annual net primary biomass.On the other hand, they represent a promising source of biomass feedstock for fuels and chemicals, as many species possess the ability to grow rapidly and synthesize large amounts of storage neutral lipids in a form of triacylglycerol (TAG) from sunlight and carbon dioxide and moreover can be cultivated on non-arable land with non-potable water and waste streams (e.g., flue gases and wastewaters) and thus pose little competition to food crops while providing environmental benefits.eicosapentaenoic acid), and tolerate broad environmental and culture conditions. This genus-wide set of oleaginous genomes thus provides an opportunity to identify the diversity and evolution of TF families as well as TFBSs in Nannochloropsis.
Furthermore, comparative analysis of six Nannochloropsis genomes revealed 68 “most-conserved” TFBS motifs, with 11 of which predicted to be related to lipid accumulation or photosynthesis.
Both experimental and computational methods have been developed for the identification of TFBS motifs in the promoters of TF target genes on a genome-wide scale.
Experimental methods such as DNase footprinting can be costly and time-consuming.
These results form the basis of further experiments to validate and engineer the regulatory network of Nannochloropsis spp.
for enhanced biofuel production.) was typically employed as the major criteria for identification of TFs and moreover, for classification of the TFs into individual TF families.oceanica strain IMET1 as a function of time (i.e., over the six time points of 3, 4, 6, 12, 24, 48 h) under both N-replete (N ) and N-depleted (N-) conditions via m RNA-Seq. The degree of similarity in TF-family profiles was found to be indicative of the phylogenetic relationship among the species, suggesting that the co-evolution of species and TF profiles occurred largely at the level of TF-family.